Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus Laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria.
Identifieur interne : 001461 ( Main/Exploration ); précédent : 001460; suivant : 001462Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus Laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria.
Auteurs : Aurélie Deveau [France] ; Matthieu Barret ; Abdala G. Diedhiou ; Johan Leveau ; Wietse De Boer ; Francis Martin ; Alain Sarniguet ; Pascale Frey-KlettSource :
- Microbial ecology [ 1432-184X ] ; 2015.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Bactéries, Laccaria, Mycorhizes.
- Microbiologie du sol.
English descriptors
- KwdEn :
- MESH :
- genetics : Bacteria, Laccaria, Mycorrhizae.
- Soil Microbiology.
Abstract
Ectomycorrhizal fungi are surrounded by bacterial communities with which they interact physically and metabolically during their life cycle. These bacteria can have positive or negative effects on the formation and the functioning of ectomycorrhizae. However, relatively little is known about the mechanisms by which ectomycorrhizal fungi and associated bacteria interact. To understand how ectomycorrhizal fungi perceive their biotic environment and the mechanisms supporting interactions between ectomycorrhizal fungi and soil bacteria, we analysed the pairwise transcriptomic responses of the ectomycorrhizal fungus Laccaria bicolor (Basidiomycota: Agaricales) when confronted with beneficial, neutral or detrimental soil bacteria. Comparative analyses of the three transcriptomes indicated that the fungus reacted differently to each bacterial strain. Similarly, each bacterial strain produced a specific and distinct response to the presence of the fungus. Despite these differences in responses observed at the gene level, we found common classes of genes linked to cell-cell interaction, stress response and metabolic processes to be involved in the interaction of the four microorganisms.
DOI: 10.1007/s00248-014-0445-y
PubMed: 25085516
Affiliations:
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Diedhiou</name></author><author><name sortKey="Leveau, Johan" sort="Leveau, Johan" uniqKey="Leveau J" first="Johan" last="Leveau">Johan Leveau</name></author><author><name sortKey="De Boer, Wietse" sort="De Boer, Wietse" uniqKey="De Boer W" first="Wietse" last="De Boer">Wietse De Boer</name></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name></author><author><name sortKey="Sarniguet, Alain" sort="Sarniguet, Alain" uniqKey="Sarniguet A" first="Alain" last="Sarniguet">Alain Sarniguet</name></author><author><name sortKey="Frey Klett, Pascale" sort="Frey Klett, Pascale" uniqKey="Frey Klett P" first="Pascale" last="Frey-Klett">Pascale Frey-Klett</name></author></analytic><series><title level="j">Microbial ecology</title><idno type="eISSN">1432-184X</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria (genetics)</term><term>Laccaria (genetics)</term><term>Mycorrhizae (genetics)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bactéries (génétique)</term><term>Laccaria (génétique)</term><term>Microbiologie du sol (MeSH)</term><term>Mycorhizes (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Laccaria</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bactéries</term><term>Laccaria</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Microbiologie du sol</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Ectomycorrhizal fungi are surrounded by bacterial communities with which they interact physically and metabolically during their life cycle. These bacteria can have positive or negative effects on the formation and the functioning of ectomycorrhizae. However, relatively little is known about the mechanisms by which ectomycorrhizal fungi and associated bacteria interact. To understand how ectomycorrhizal fungi perceive their biotic environment and the mechanisms supporting interactions between ectomycorrhizal fungi and soil bacteria, we analysed the pairwise transcriptomic responses of the ectomycorrhizal fungus Laccaria bicolor (Basidiomycota: Agaricales) when confronted with beneficial, neutral or detrimental soil bacteria. Comparative analyses of the three transcriptomes indicated that the fungus reacted differently to each bacterial strain. Similarly, each bacterial strain produced a specific and distinct response to the presence of the fungus. Despite these differences in responses observed at the gene level, we found common classes of genes linked to cell-cell interaction, stress response and metabolic processes to be involved in the interaction of the four microorganisms. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25085516</PMID><DateCompleted><Year>2015</Year><Month>09</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-184X</ISSN><JournalIssue CitedMedium="Internet"><Volume>69</Volume><Issue>1</Issue><PubDate><Year>2015</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Microbial ecology</Title><ISOAbbreviation>Microb Ecol</ISOAbbreviation></Journal><ArticleTitle>Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus Laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria.</ArticleTitle><Pagination><MedlinePgn>146-59</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-014-0445-y</ELocationID><Abstract><AbstractText>Ectomycorrhizal fungi are surrounded by bacterial communities with which they interact physically and metabolically during their life cycle. These bacteria can have positive or negative effects on the formation and the functioning of ectomycorrhizae. However, relatively little is known about the mechanisms by which ectomycorrhizal fungi and associated bacteria interact. To understand how ectomycorrhizal fungi perceive their biotic environment and the mechanisms supporting interactions between ectomycorrhizal fungi and soil bacteria, we analysed the pairwise transcriptomic responses of the ectomycorrhizal fungus Laccaria bicolor (Basidiomycota: Agaricales) when confronted with beneficial, neutral or detrimental soil bacteria. Comparative analyses of the three transcriptomes indicated that the fungus reacted differently to each bacterial strain. Similarly, each bacterial strain produced a specific and distinct response to the presence of the fungus. Despite these differences in responses observed at the gene level, we found common classes of genes linked to cell-cell interaction, stress response and metabolic processes to be involved in the interaction of the four microorganisms. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Deveau</LastName><ForeName>Aurélie</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Interactions Arbres - Microorganismes, INRA UMR1136, 54280, Champenoux, France, Aurelie.Deveau@nancy.inra.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barret</LastName><ForeName>Matthieu</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Diedhiou</LastName><ForeName>Abdala G</ForeName><Initials>AG</Initials></Author><Author ValidYN="Y"><LastName>Leveau</LastName><ForeName>Johan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>de Boer</LastName><ForeName>Wietse</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Francis</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Sarniguet</LastName><ForeName>Alain</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Frey-Klett</LastName><ForeName>Pascale</ForeName><Initials>P</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>08</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Microb Ecol</MedlineTA><NlmUniqueID>7500663</NlmUniqueID><ISSNLinking>0095-3628</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055399" MajorTopicYN="N">Laccaria</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>02</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>06</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>8</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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Diedhiou</name><name sortKey="Frey Klett, Pascale" sort="Frey Klett, Pascale" uniqKey="Frey Klett P" first="Pascale" last="Frey-Klett">Pascale Frey-Klett</name><name sortKey="Leveau, Johan" sort="Leveau, Johan" uniqKey="Leveau J" first="Johan" last="Leveau">Johan Leveau</name><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><name sortKey="Sarniguet, Alain" sort="Sarniguet, Alain" uniqKey="Sarniguet A" first="Alain" last="Sarniguet">Alain Sarniguet</name></noCountry><country name="France"><noRegion><name sortKey="Deveau, Aurelie" sort="Deveau, Aurelie" uniqKey="Deveau A" first="Aurélie" last="Deveau">Aurélie Deveau</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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